Namespace amici

Namespaces

• Namespace amici::hdf5

Classes

• Struct LogItem

• Struct ModelDimensions

• Struct ModelState

• Struct ModelStateDerived

• Struct SimulationState

• Class AbstractModel

• Class AbstractSpline

• Class AmiException

• Class AmiVector

• Class AmiVectorArray

• Class BackwardProblem

• Class ConditionContext

• Class ContextManager

• Class CpuTimer

• Class CvodeException

• Class CVodeSolver

• Class ExpData

• Class FinalStateStorer

• Class ForwardProblem

• Class HermiteSpline

• Class IDAException

• Class IDASolver

• Class IntegrationFailure

• Class IntegrationFailureB

• Class Logger

• Class Model

• Class Model_DAE

• Class Model_ODE

• Class ModelContext

• Class NewtonFailure

• Class NewtonSolver

• Class ReturnData

• Class SetupFailure

• Class SimulationParameters

• Class Solver

• Class SteadystateProblem

• Class SUNLinSolBand

• Class SUNLinSolDense

• Class SUNLinSolKLU

• Class SUNLinSolPCG

• Class SUNLinSolSPBCGS

• Class SUNLinSolSPFGMR

• Class SUNLinSolSPGMR

• Class SUNLinSolSPTFQMR

• Class SUNLinSolWrapper

• Class SUNMatrixWrapper

• Class SUNNonLinSolFixedPoint

• Class SUNNonLinSolNewton

• Class SUNNonLinSolWrapper

Enums

• Enum BLASLayout

• Enum BLASTranspose

• Enum Constraint

• Enum FixedParameterContext

• Enum InternalSensitivityMethod

• Enum InterpolationType

• Enum LinearMultistepMethod

• Enum LinearSolver

• Enum LogSeverity

• Enum ModelQuantity

• Enum NewtonDampingFactorMode

• Enum NonlinearSolverIteration

• Enum ObservableScaling

• Enum ParameterScaling

• Enum RDataReporting

• Enum SecondOrderMode

• Enum SensitivityMethod

• Enum SensitivityOrder

• Enum SplineBoundaryCondition

• Enum SplineExtrapolation

• Enum SteadyStateComputationMode

• Enum SteadyStateContext

• Enum SteadyStateSensitivityMode

• Enum SteadyStateStatus

Functions

• Template Function amici::addSlice(gsl::span<T const> const, gsl::span<T>)

• Template Function amici::addSlice(std::vector<T> const&, gsl::span<T>)

• Function amici::amici_daxpy

• Function amici::amici_dgemm

• Function amici::amici_dgemv

• Function amici::backtraceString

• Template Function amici::checkBufferSize

• Function amici::checkSigmaPositivity(std::vector<realtype> const&, char const *)

• Function amici::checkSigmaPositivity(realtype, char const *)

• Template Function amici::deserializeFromChar

• Template Function amici::deserializeFromString

• Function amici::dotProd

• Function amici::getScaledParameter

• Function amici::getUnscaledParameter

• Template Function amici::is_equal

• Function amici::linearSum

• Function amici::N_VGetArrayPointerConst

• Function amici::operator==(ModelState const&, ModelState const&)

• Function amici::operator==(SimulationParameters const&, SimulationParameters const&)

• Function amici::operator==(Solver const&, Solver const&)

• Function amici::operator==(ExpData const&, ExpData const&)

• Function amici::operator==(Model const&, Model const&)

• Function amici::operator==(ModelDimensions const&, ModelDimensions const&)

• Function amici::printfToString

• Function amici::regexErrorToString

• Function amici::runAmiciSimulation

• Function amici::runAmiciSimulations

• Function amici::scaleParameters

• Template Function amici::serializeToChar

• Template Function amici::serializeToStdVec

• Template Function amici::serializeToString

• Function amici::simulation_status_to_str

• Template Function amici::slice(std::vector<T>&, int, unsigned)

• Template Function amici::slice(std::vector<T> const&, int, unsigned)

• Function amici::unravel_index(sunindextype, SUNMatrix)

• Function amici::unravel_index(size_t, size_t)

• Function amici::unscaleParameters

• Template Function amici::writeSlice(std::vector<T> const&, std::vector<T>&)

• Template Function amici::writeSlice(std::vector<T> const&, gsl::span<T>)

• Function amici::writeSlice(AmiVector const&, gsl::span<realtype>)

• Template Function amici::writeSlice(gsl::span<T const> const, gsl::span<T>)

Typedefs

• Typedef amici::const_N_Vector

• Typedef amici::realtype

Variables

• Variable amici::AMICI_BAD_DKY

• Variable amici::AMICI_BAD_T

• Variable amici::AMICI_CONSTR_FAIL

• Variable amici::AMICI_CONV_FAILURE

• Variable amici::AMICI_CVODES_CONSTR_FAIL

• Variable amici::AMICI_DAMPING_FACTOR_ERROR

• Variable amici::AMICI_DATA_RETURN

• Variable amici::AMICI_ERR_FAILURE

• Variable amici::AMICI_ERROR

• Variable amici::AMICI_FIRST_QRHSFUNC_ERR

• Variable amici::AMICI_FIRST_RHSFUNC_ERR

• Variable amici::AMICI_FIRST_SRHSFUNC_ERR

• Variable amici::AMICI_IDAS_CONSTR_FAIL

• Variable amici::AMICI_ILL_INPUT

• Variable amici::AMICI_LSETUP_FAIL

• Variable amici::AMICI_MAX_TIME_EXCEEDED

• Variable amici::AMICI_NO_STEADY_STATE

• Variable amici::AMICI_NORMAL

• Variable amici::AMICI_NOT_IMPLEMENTED

• Variable amici::AMICI_NOT_RUN

• Variable amici::AMICI_ONE_STEP

• Variable amici::AMICI_PREEQUILIBRATE

• Variable amici::AMICI_RECOVERABLE_ERROR

• Variable amici::AMICI_REPTD_SRHSFUNC_ERR

• Variable amici::AMICI_RHSFUNC_FAIL

• Variable amici::AMICI_ROOT_RETURN

• Variable amici::AMICI_SINGULAR_JACOBIAN

• Variable amici::AMICI_SRHSFUNC_FAIL

• Variable amici::AMICI_SUCCESS

• Variable amici::AMICI_TOO_MUCH_ACC

• Variable amici::AMICI_TOO_MUCH_WORK

• Variable amici::AMICI_UNREC_SRHSFUNC_ERR

• Variable amici::AMICI_UNRECOVERABLE_ERROR

• Variable amici::AMICI_WARNING

• Variable amici::model_quantity_to_str

• Variable amici::pi