amici.plotting

Plotting

Plotting related functions

Functions Summary

plotObservableTrajectories(rdata[, …])	Plot observable trajectories
plotStateTrajectories(rdata[, …])	Plot state trajectories

Functions

amici.plotting.plotObservableTrajectories(rdata, observable_indices=None, ax=None, model=None)

Plot observable trajectories

Parameters

• rdata (amici.numpy.ReturnDataView) – AMICI simulation results as returned by amici.amici.runAmiciSimulation()

• observable_indices (typing.Optional[typing.Iterable[int]]) – Indices of observables for which trajectories are to be plotted

• ax (typing.Optional[matplotlib.axes._axes.Axes]) – matplotlib Axes instance to plot into

• model (typing.Optional[amici.amici.Model]) – amici model instance

Return type

None

amici.plotting.plotStateTrajectories(rdata, state_indices=None, ax=None, model=None)

Plot state trajectories

Parameters

• rdata (amici.numpy.ReturnDataView) – AMICI simulation results as returned by amici.amici.runAmiciSimulation()

• state_indices (typing.Optional[typing.Iterable[int]]) – Indices of states for which trajectories are to be plotted

• ax (typing.Optional[matplotlib.axes._axes.Axes]) – matplotlib Axes instance to plot into

• model (typing.Optional[amici.amici.Model]) – amici model instance

Return type

None