File hdf5.h

↰ Parent directory (include/amici)

Definition (include/amici/hdf5.h)

• Program Listing for File hdf5.h

Includes

• H5Cpp.h

• gsl/gsl-lite.hpp

• memory

• string

• vector (File vector.h)

Namespaces

• Namespace amici

• Namespace amici::hdf5

Functions

• Function amici::hdf5::attributeExists(H5::H5File const &file, const std::string &optionsObject, const std::string &attributeName)

• Function amici::hdf5::attributeExists(H5::H5Object const &object, const std::string &attributeName)

• Function amici::hdf5::createAndWriteDouble1DDataset

• Function amici::hdf5::createAndWriteDouble2DDataset

• Function amici::hdf5::createAndWriteDouble3DDataset

• Function amici::hdf5::createAndWriteInt1DDataset

• Function amici::hdf5::createAndWriteInt2DDataset

• Function amici::hdf5::createGroup

• Function amici::hdf5::createOrOpenForWriting

• Function amici::hdf5::getDoubleDataset1D

• Function amici::hdf5::getDoubleDataset2D

• Function amici::hdf5::getDoubleDataset3D

• Function amici::hdf5::getDoubleScalarAttribute

• Function amici::hdf5::getIntDataset1D

• Function amici::hdf5::getIntScalarAttribute

• Function amici::hdf5::locationExists(std::string const &filename, std::string const &location)

• Function amici::hdf5::locationExists(H5::H5File const &file, std::string const &location)

• Function amici::hdf5::readModelDataFromHDF5(std::string const &hdffile, Model &model, std::string const &datasetPath)

• Function amici::hdf5::readModelDataFromHDF5(H5::H5File const &file, Model &model, std::string const &datasetPath)

• Function amici::hdf5::readSimulationExpData

• Function amici::hdf5::readSolverSettingsFromHDF5(const H5::H5File &file, Solver &solver, std::string const &datasetPath)

• Function amici::hdf5::readSolverSettingsFromHDF5(std::string const &hdffile, Solver &solver, std::string const &datasetPath)

• Function amici::hdf5::writeReturnData(const ReturnData &rdata, H5::H5File const &file, const std::string &hdf5Location)

• Function amici::hdf5::writeReturnData(const ReturnData &rdata, std::string const &hdf5Filename, const std::string &hdf5Location)

• Function amici::hdf5::writeReturnDataDiagnosis

• Function amici::hdf5::writeSimulationExpData

• Function amici::hdf5::writeSolverSettingsToHDF5(Solver const &solver, std::string const &hdf5Filename, std::string const &hdf5Location)

• Function amici::hdf5::writeSolverSettingsToHDF5(Solver const &solver, H5::H5File const &file, std::string const &hdf5Location)

Defines

• Define AMICI_H5_RESTORE_ERROR_HANDLER

• Define AMICI_H5_SAVE_ERROR_HANDLER