amici.petab.pysb_import

PySB-PEtab Import

Import a model in the PySB-adapted petab (https://github.com/PEtab-dev/PEtab) format into AMICI.

Functions

import_model_pysb(petab_problem[, ...])

Create AMICI model from PySB-PEtab problem

amici.petab.pysb_import.import_model_pysb(petab_problem, model_output_dir=None, verbose=True, model_name=None, **kwargs)

Create AMICI model from PySB-PEtab problem

Parameters:

• petab_problem (petab.problem.Problem) – PySB PEtab problem

• model_output_dir (typing.Union[str, pathlib.Path, None]) – Directory to write the model code to. Will be created if doesn’t exist. Defaults to current directory.

• verbose (typing.Union[bool, int, None]) – Print/log extra information.

• model_name (typing.Optional[str]) – Name of the generated model module

• kwargs – Additional keyword arguments to be passed to amici.pysb_import.pysb2amici().

Return type:

None