amici.petab_import_pysb

PEtab import for PySB models

Deprecated since version 0.21.0: Use amici.petab.pysb_import instead.

amici.petab_import_pysb.import_model_pysb(petab_problem, model_output_dir=None, verbose=True, model_name=None, jax=False, **kwargs)[source]

Create AMICI model from PySB-PEtab problem

Parameters:

  • petab_problem (petab.v1.problem.Problem) – PySB PEtab problem

  • model_output_dir (str | pathlib.Path | None) – Directory to write the model code to. Will be created if doesn’t exist. Defaults to current directory.

  • verbose (bool | int | None) – Print/log extra information.

  • model_name (str | None) – Name of the generated model module

  • jax (bool) – Whether to generate JAX code instead of C++ code.

  • kwargs – Additional keyword arguments to be passed to amici.pysb_import.pysb2amici().

Return type:

None