Examples

Various example notebooks.

• Getting Started in AMICI
• AMICI Python example “steadystate”
• Using PEtab
• AMICI Python example “Experimental Conditions”
• AMICI documentation example of the steady state solver logic
• Debugging simulation failures
• Speeding up model import and simulation - with a focus on large models
• Preparation
• JAX implementation
• Testing
• AMICI Python example “splines”
• Spline implementation of JAK2-STAT5 signaling pathway