amici.plotting

Plotting

Plotting related functions

Functions

plotObservableTrajectories(rdata[, ...])

Plot observable trajectories

plotStateTrajectories(rdata[, ...])

Plot state trajectories

plot_jacobian(rdata)

Plot Jacobian as heatmap.

plot_observable_trajectories(rdata[, ...])

Plot observable trajectories

plot_state_trajectories(rdata[, ...])

Plot state trajectories

amici.plotting.plotObservableTrajectories(rdata, observable_indices=None, ax=None, model=None, prefer_names=True)

Plot observable trajectories

Parameters
Return type

None

amici.plotting.plotStateTrajectories(rdata, state_indices=None, ax=None, model=None, prefer_names=True)

Plot state trajectories

Parameters
Return type

None

amici.plotting.plot_jacobian(rdata)[source]

Plot Jacobian as heatmap.

amici.plotting.plot_observable_trajectories(rdata, observable_indices=None, ax=None, model=None, prefer_names=True)[source]

Plot observable trajectories

Parameters
Return type

None

amici.plotting.plot_state_trajectories(rdata, state_indices=None, ax=None, model=None, prefer_names=True)[source]

Plot state trajectories

Parameters
Return type

None