amici.petab_simulate
PEtab Simulate
Functionality related to the use of AMICI for simulation with PEtab’s Simulator class.
Use cases:
generate data for use with PEtab’s plotting methods
generate synthetic data
Classes
|
Implementation of the PEtab Simulator class that uses AMICI. |
Functions Summary
|
Helper function to call a method with the intersection of arguments in the method signature and the supplied arguments. |
Functions
- amici.petab_simulate.subset_call(method, kwargs)[source]
Helper function to call a method with the intersection of arguments in the method signature and the supplied arguments.
- Parameters
method (
typing.Callable
) – The method to be called.kwargs (
dict
) – The argument superset as a dictionary, similar to **kwargs in method signatures.
- Returns
The output of method, called with the applicable arguments in kwargs.