amici

AMICI

The AMICI Python module provides functionality for importing SBML or PySB models and turning them into C++ Python extensions.

var amici_path: absolute root path of the amici repository or Python package
var amiciSwigPath: absolute path of the amici swig directory
var amiciSrcPath: absolute path of the amici source directory
var amiciModulePath: absolute root path of the amici module
var hdf5_enabled: boolean indicating if amici was compiled with hdf5 support
var has_clibs: boolean indicating if this is the full package with swig interface or the raw package without

Classes

`ModelModule`(args, *kwargs)	Enable Python static type checking for AMICI-generated model modules
`add_path`(path)	Context manager for temporarily changing PYTHONPATH

Functions Summary

import_model_module(module_name[, module_path])

Import Python module of an AMICI model

Functions

amici.import_model_module(module_name, module_path=None)[source]

Import Python module of an AMICI model

Parameters

module_name (str) – Name of the python package of the model
module_path (typing.Union[pathlib.Path, str, None]) – Absolute or relative path of the package directory

Return type

amici.ModelModule

Returns

The model module