Program Listing for File amici.h
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#ifndef amici_h
#define amici_h
#include "amici/cblas.h"
#include "amici/defines.h"
#include "amici/edata.h"
#include "amici/exception.h"
#include "amici/model.h"
#include "amici/rdata.h"
#include "amici/solver.h"
#include "amici/symbolic_functions.h"
namespace amici {
void printErrMsgIdAndTxt(std::string const &id, std::string const &message);
void printWarnMsgIdAndTxt(std::string const &id, std::string const &message);
class AmiciApplication {
public:
AmiciApplication() = default;
std::unique_ptr<ReturnData> runAmiciSimulation(Solver &solver,
const ExpData *edata,
Model &model,
bool rethrow = false);
std::vector<std::unique_ptr<ReturnData>>
runAmiciSimulations(Solver const &solver,
const std::vector<ExpData *> &edatas,
Model const &model, bool failfast, int num_threads);
outputFunctionType warning = printWarnMsgIdAndTxt;
outputFunctionType error = printErrMsgIdAndTxt;
void warningF(const char *identifier, const char *format, ...) const;
void errorF(const char *identifier, const char *format, ...) const;
int checkFinite(gsl::span<const realtype> array, const char *fun);
};
std::unique_ptr<ReturnData> runAmiciSimulation(Solver &solver,
const ExpData *edata,
Model &model,
bool rethrow = false);
std::vector<std::unique_ptr<ReturnData>>
runAmiciSimulations(Solver const &solver, const std::vector<ExpData *> &edatas,
Model const &model, bool failfast, int num_threads);
} // namespace amici
#endif /* amici_h */