AMICI Python API

Modules

amici

AMICI

amici.amici

Core C++ bindings

amici.sbml_import

SBML Import

amici.pysb_import

PySB Import

amici.petab_import

PEtab Import

amici.petab_import_pysb

PySB-PEtab Import

amici.petab_objective

PEtab Objective

amici.import_utils

Miscellaneous functions related to model import, independent of any specific model format

amici.ode_export

C++ Export

amici.plotting

Plotting

amici.pandas

Pandas Wrappers

amici.logging

Logging

amici.gradient_check

Finite Difference Check

amici.parameter_mapping

Parameter mapping