amici.plotting¶
Plotting¶
Plotting related functions
Functions Summary
|
Plot observable trajectories |
|
Plot state trajectories |
Functions
-
amici.plotting.
plotObservableTrajectories
(rdata, observable_indices=None, ax=None, model=None)[source]¶ Plot observable trajectories
- Parameters
rdata (
amici.numpy.ReturnDataView
) – AMICI simulation results as returned byamici.amici.runAmiciSimulation()
observable_indices (
typing.Optional
[typing.Iterable
[int
]]) – Indices of observables for which trajectories are to be plottedax (
typing.Optional
[matplotlib.axes._axes.Axes
]) – matplotlib Axes instance to plot intomodel (
typing.Optional
[amici.amici.Model
]) – amici model instance
- Return type
-
amici.plotting.
plotStateTrajectories
(rdata, state_indices=None, ax=None, model=None)[source]¶ Plot state trajectories
- Parameters
rdata (
amici.numpy.ReturnDataView
) – AMICI simulation results as returned byamici.amici.runAmiciSimulation()
state_indices (
typing.Optional
[typing.Iterable
[int
]]) – Indices of states for which trajectories are to be plottedax (
typing.Optional
[matplotlib.axes._axes.Axes
]) – matplotlib Axes instance to plot intomodel (
typing.Optional
[amici.amici.Model
]) – amici model instance
- Return type