amici.plotting

Plotting

Plotting related functions

Functions

plotObservableTrajectories(rdata[, ...])

Plot observable trajectories.

plotStateTrajectories(rdata[, ...])

Plot state trajectories.

plot_expressions(exprs, rdata)

Plot the given expressions evaluated on the given simulation outputs.

plot_jacobian(rdata)

Plot Jacobian as heatmap.

plot_observable_trajectories(rdata[, ...])

Plot observable trajectories.

plot_state_trajectories(rdata[, ...])

Plot state trajectories.

amici.plotting.plotObservableTrajectories(rdata, observable_indices=None, ax=None, model=None, prefer_names=True, marker=None, edata=None)

Plot observable trajectories.

Parameters:
Return type:

None

amici.plotting.plotStateTrajectories(rdata, state_indices=None, ax=None, model=None, prefer_names=True, marker=None)

Plot state trajectories.

Parameters:
Return type:

None

amici.plotting.plot_expressions(exprs, rdata)[source]

Plot the given expressions evaluated on the given simulation outputs.

Parameters:
Return type:

None

amici.plotting.plot_jacobian(rdata)[source]

Plot Jacobian as heatmap.

amici.plotting.plot_observable_trajectories(rdata, observable_indices=None, ax=None, model=None, prefer_names=True, marker=None, edata=None)[source]

Plot observable trajectories.

Parameters:
Return type:

None

amici.plotting.plot_state_trajectories(rdata, state_indices=None, ax=None, model=None, prefer_names=True, marker=None)[source]

Plot state trajectories.

Parameters:
Return type:

None