Struct ModelDimensions

Inheritance Relationships

Derived Types

Struct Documentation

struct ModelDimensions

Container for model dimensions.

Holds number of states, observables, etc.

Subclassed by amici::Model, amici::ReturnData

Public Functions

ModelDimensions() = default

Default ctor

inline ModelDimensions(int const nx_rdata, int const nxtrue_rdata, int const nx_solver, int const nxtrue_solver, int const nx_solver_reinit, int const np, int const nk, int const ny, int const nytrue, int const nz, int const nztrue, int const ne, int const ne_solver, int const nspl, int const nJ, int const nw, int const ndwdx, int const ndwdp, int const ndwdw, int const ndxdotdw, std::vector<int> ndJydy, int const ndxrdatadxsolver, int const ndxrdatadtcl, int const ndtotal_cldx_rdata, int const nnz, int const ubw, int const lbw)

Constructor with model dimensions.

Parameters:

  • nx_rdata – Number of state variables

  • nxtrue_rdata – Number of state variables of the non-augmented model

  • nx_solver – Number of state variables with conservation laws applied

  • nxtrue_solver – Number of state variables of the non-augmented model with conservation laws applied

  • nx_solver_reinit – Number of state variables with conservation laws subject to reinitialization

  • np – Number of parameters

  • nk – Number of constants

  • ny – Number of observables

  • nytrue – Number of observables of the non-augmented model

  • nz – Number of event observables

  • nztrue – Number of event observables of the non-augmented model

  • ne – Number of events

  • ne_solver – Number of events that require root-finding

  • nspl – Number of splines

  • nJ – Number of objective functions

  • nw – Number of repeating elements

  • ndwdx – Number of nonzero elements in the x derivative of the repeating elements

  • ndwdp – Number of nonzero elements in the p derivative of the repeating elements

  • ndwdw – Number of nonzero elements in the w derivative of the repeating elements

  • ndxdotdw – Number of nonzero elements in the \( w\) derivative of \( xdot\)

  • ndJydy – Number of nonzero elements in the \( y\) derivative of \( dJy\) (shape nytrue)

  • ndxrdatadxsolver – Number of nonzero elements in the \( x\) derivative of \( x_rdata\)

  • ndxrdatadtcl – Number of nonzero elements in the \( tcl\) derivative of \( x_rdata\)

  • ndtotal_cldx_rdata – Number of nonzero elements in the \( x_rdata \) derivative of \( total_cl \)

  • nnz – Number of nonzero elements in Jacobian

  • ubw – Upper matrix bandwidth in the Jacobian

  • lbw – Lower matrix bandwidth in the Jacobian

Public Members

int nx_rdata = {0}

Number of states

int nxtrue_rdata = {0}

Number of states in the unaugmented system

int nx_solver = {0}

Number of states with conservation laws applied

int nxtrue_solver = {0}

Number of states in the unaugmented system with conservation laws applied

int nx_solver_reinit = {0}

Number of solver states subject to reinitialization

int np = {0}

Number of parameters

int nk = {0}

Number of constants

int ny = {0}

Number of observables

int nytrue = {0}

Number of observables in the unaugmented system

int nz = {0}

Number of event outputs

int nztrue = {0}

Number of event outputs in the unaugmented system

int ne = {0}

Number of events

int ne_solver = {0}

Number of events that require root-finding

int nspl = {0}

Number of spline functions in the model

int nw = {0}

Number of common expressions

int ndwdx = {0}

Number of nonzero elements in the x derivative of the repeating elements

int ndwdp = {0}

Number of nonzero elements in the p derivative of the repeating elements

int ndwdw = {0}

Number of nonzero elements in the w derivative of the repeating elements

int ndxdotdw = {0}

Number of nonzero elements in the \( w \) derivative of \( xdot \)

std::vector<int> ndJydy

Number of nonzero elements in the \( y \) derivative of \( dJy \) (dimension nytrue)

int ndxrdatadxsolver = {0}

Number of nonzero elements in the \( x \) derivative of \( x_rdata \)

int ndxrdatadtcl = {0}

Number of nonzero elements in the \( tcl\) derivative of \( x_rdata \)

int ndtotal_cldx_rdata = {0}

Number of nonzero elements in the \( x_rdata\) derivative of \( total_cl \)

int nnz = {0}

Number of nonzero entries in Jacobian

int nJ = {0}

Dimension of the augmented objective function for 2nd order ASA

int ubw = {0}

Upper bandwidth of the Jacobian

int lbw = {0}

Lower bandwidth of the Jacobian